Detailed information of SNP:
|
SNP ID:
sf0517672984(Gbrowse)
Chromosome: chr05 Position: 17672984 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 82.33% | 17.67% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 62.17% | 37.83% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517672984 | G->A | LOC_Os05g30610(LOC_Os05g30610.1) | Non-Synonymous SNP |