Detailed information of SNP:
|
SNP ID:
sf0517673028(Gbrowse)
Chromosome: chr05 Position: 17673028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 81.33% | 18.67% |
| All Indica | 701 | 69.61% | 30.39% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 49 | 57.14% | 42.86% |
| Indica I | 320 | 64.38% | 35.62% |
| Indica II | 192 | 78.12% | 21.88% |
| Indica Intermediate | 189 | 69.84% | 30.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517673028 | C->T | LOC_Os05g30610(LOC_Os05g30610.1) | Synonymous |