Detailed information of SNP:
|
SNP ID:
sf0517673601(Gbrowse)
Chromosome: chr05 Position: 17673601 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 94.77% | 5.23% |
| All Indica | 794 | 95.59% | 4.41% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517673601 | C->T | LOC_Os05g30610(LOC_Os05g30610.1) | Synonymous |