Detailed information of SNP:
|
SNP ID:
sf0517682607(Gbrowse)
Chromosome: chr05 Position: 17682607 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1314 | 52.36% | 47.64% |
| All Indica | 702 | 86.32% | 13.68% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 62 | 62.90% | 37.10% |
| Indica I | 325 | 94.77% | 5.23% |
| Indica II | 193 | 72.02% | 27.98% |
| Indica Intermediate | 184 | 86.41% | 13.59% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517682607 | C->T | INTERGENIC | None |