Detailed information of SNP:
|
SNP ID:
sf0517692595(Gbrowse)
Chromosome: chr05 Position: 17692595 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 55.00% | 45.00% |
| All Indica | 792 | 85.73% | 14.27% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 209 | 74.64% | 25.36% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517692595 | A->G | LOC_Os05g30640(LOC_Os05g30640.1) | Non-Synonymous SNP |