Detailed information of SNP:
|
SNP ID:
sf0517692819(Gbrowse)
Chromosome: chr05 Position: 17692819 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 57.08% | 42.92% |
| All Indica | 794 | 89.29% | 10.71% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 209 | 79.43% | 20.57% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517692819 | T->G | LOC_Os05g30640(LOC_Os05g30640.1) | UTR_3_PRIME |