Detailed information of SNP:
|
SNP ID:
sf0517693883(Gbrowse)
Chromosome: chr05 Position: 17693883 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 79.69% | 20.31% |
| All Indica | 793 | 96.72% | 3.28% |
| All Japonica | 497 | 48.69% | 51.31% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517693883 | T->C | INTERGENIC | None |