Detailed information of SNP:
|
SNP ID:
sf0517701625(Gbrowse)
Chromosome: chr05 Position: 17701625 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 52.32% | 47.68% |
| All Indica | 760 | 56.45% | 43.55% |
| All Japonica | 497 | 42.66% | 57.34% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 356 | 49.44% | 50.56% |
| Indica II | 203 | 69.46% | 30.54% |
| Indica Intermediate | 201 | 55.72% | 44.28% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517701625 | A->G | LOC_Os05g30670(LOC_Os05g30670.1) | INTRON |