Detailed information of SNP:
|
SNP ID:
sf0517708344(Gbrowse)
Chromosome: chr05 Position: 17708344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.00% | 6.00% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 481 | 83.78% | 16.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 84.40% | 15.60% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 62 | 69.35% | 30.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517708344 | G->A | INTERGENIC | None |