Detailed information of SNP:
|
SNP ID:
sf0517726967(Gbrowse)
Chromosome: chr05 Position: 17726967 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517726967 | A->T | INTERGENIC | None |