Detailed information of SNP:
|
SNP ID:
sf0517732619(Gbrowse)
Chromosome: chr05 Position: 17732619 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 94.08% | 5.92% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517732619 | A->G | INTERGENIC | None |