Detailed information of SNP:
|
SNP ID:
sf0517737121(Gbrowse)
Chromosome: chr05 Position: 17737121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 93.53% | 6.47% |
| All Indica | 779 | 97.30% | 2.70% |
| All Japonica | 489 | 96.32% | 3.68% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 368 | 95.11% | 4.89% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 98.52% | 1.48% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517737121 | C->T | INTERGENIC | None |