Detailed information of SNP:
|
SNP ID:
sf0517742421(Gbrowse)
Chromosome: chr05 Position: 17742421 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.95% | 44.05% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517742421 | T->C | INTERGENIC | None |