Detailed information of SNP:
|
SNP ID:
sf0517780926(Gbrowse)
Chromosome: chr05 Position: 17780926 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517780926 | C->T | INTERGENIC | None |