Detailed information of SNP:
|
SNP ID:
sf0517903368(Gbrowse)
Chromosome: chr05 Position: 17903368 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 96.46% | 3.54% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 490 | 92.86% | 7.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 93.05% | 6.95% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517903368 | T->A | LOC_Os05g30940(LOC_Os05g30940.1) | Non-Synonymous SNP |