Detailed information of SNP:
|
SNP ID:
sf0517916886(Gbrowse)
Chromosome: chr05 Position: 17916886 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 75.71% | 24.29% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 486 | 35.39% | 64.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 17.07% | 82.93% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517916886 | G->C | INTERGENIC | None |