Detailed information of SNP:
|
SNP ID:
sf0517917102(Gbrowse)
Chromosome: chr05 Position: 17917102 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 75.89% | 24.11% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 488 | 35.04% | 64.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517917102 | T->C | INTERGENIC | None |