Detailed information of SNP:
|
SNP ID:
sf0517917241(Gbrowse)
Chromosome: chr05 Position: 17917241 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 75.69% | 24.31% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 489 | 34.56% | 65.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 16.31% | 83.69% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517917241 | C->T | INTERGENIC | None |