Detailed information of SNP:
|
SNP ID:
sf0517917930(Gbrowse)
Chromosome: chr05 Position: 17917930 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 65.47% | 34.53% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 495 | 21.82% | 78.18% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 9.91% | 90.09% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517917930 | C->T | LOC_Os05g30960(LOC_Os05g30960.1) | Non-Synonymous SNP |