Detailed information of SNP:
|
SNP ID:
sf0517921448(Gbrowse)
Chromosome: chr05 Position: 17921448 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1246 | 65.89% | 34.11% |
| All Indica | 642 | 91.74% | 8.26% |
| All Japonica | 490 | 39.18% | 60.82% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 287 | 83.28% | 16.72% |
| Indica II | 178 | 98.31% | 1.69% |
| Indica Intermediate | 177 | 98.87% | 1.13% |
| Temperate Japonica | 334 | 21.56% | 78.44% |
| Tropical Japonica | 89 | 82.02% | 17.98% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517921448 | C->T | INTERGENIC | None |