Detailed information of SNP:
|
SNP ID:
sf0517929163(Gbrowse)
Chromosome: chr05 Position: 17929163 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.71% | 15.29% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517929163 | G->T | LOC_Os05g30970(LOC_Os05g30970.1) | UTR_3_PRIME |