Detailed information of SNP:
|
SNP ID:
sf0517933262(Gbrowse)
Chromosome: chr05 Position: 17933262 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 90.19% | 9.81% |
| All Indica | 790 | 96.71% | 3.29% |
| All Japonica | 444 | 76.80% | 23.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 205 | 89.76% | 10.24% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 303 | 90.43% | 9.57% |
| Tropical Japonica | 85 | 45.88% | 54.12% |
| Japonica Intermediate | 56 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517933262 | G->A | INTERGENIC | None |