Detailed information of SNP:
|
SNP ID:
sf0517965520(Gbrowse)
Chromosome: chr05 Position: 17965520 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 63.96% | 36.04% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0517965520 | C->T | INTERGENIC | None |