Detailed information of SNP:
|
SNP ID:
sf0518012033(Gbrowse)
Chromosome: chr05 Position: 18012033 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.30% | 41.70% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518012033 | T->G | INTERGENIC | None |