Detailed information of SNP:
|
SNP ID:
sf0518035808(Gbrowse)
Chromosome: chr05 Position: 18035808 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 82.91% | 17.09% |
| All Indica | 797 | 96.99% | 3.01% |
| All Japonica | 496 | 59.68% | 40.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518035808 | C->T | INTERGENIC | None |