Detailed information of SNP:
|
SNP ID:
sf0518039287(Gbrowse)
Chromosome: chr05 Position: 18039287 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 84.74% | 15.26% |
| All Indica | 792 | 97.22% | 2.78% |
| All Japonica | 488 | 64.55% | 35.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 330 | 80.91% | 19.09% |
| Tropical Japonica | 91 | 28.57% | 71.43% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518039287 | C->T | LOC_Os05g31130(LOC_Os05g31130.1) | Non-Synonymous SNP |