Detailed information of SNP:
|
SNP ID:
sf0518047645(Gbrowse)
Chromosome: chr05 Position: 18047645 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 60.17% | 39.83% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518047645 | G->A | LOC_Os05g31140(LOC_Os05g31140.1) | INTRON |
| sf0518047645 | G->A | LOC_Os05g31140(LOC_Os05g31140.3) | INTRON |