Detailed information of SNP:
|
SNP ID:
sf0518053640(Gbrowse)
Chromosome: chr05 Position: 18053640 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 69.92% | 30.08% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 492 | 46.34% | 53.66% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 330 | 28.48% | 71.52% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518053640 | C->A | INTERGENIC | None |