Detailed information of SNP:
|
SNP ID:
sf0518115675(Gbrowse)
Chromosome: chr05 Position: 18115675 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 89.04% | 10.96% |
| All Indica | 777 | 82.88% | 17.12% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 363 | 79.89% | 20.11% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 204 | 77.94% | 22.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518115675 | G->A | LOC_Os05g31254(LOC_Os05g31254.1) | INTRON |