Detailed information of SNP:
|
SNP ID:
sf0518201698(Gbrowse)
Chromosome: chr05 Position: 18201698 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 92.84% | 7.16% |
| All Indica | 749 | 87.98% | 12.02% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 89.66% | 10.34% |
| Indica II | 199 | 83.42% | 16.58% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518201698 | A->T | INTERGENIC | None |