Detailed information of SNP:
|
SNP ID:
sf0518239151(Gbrowse)
Chromosome: chr05 Position: 18239151 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 97.57% | 2.43% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518239151 | A->G | INTERGENIC | None |