Detailed information of SNP:
|
SNP ID:
sf0518263832(Gbrowse)
Chromosome: chr05 Position: 18263832 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 93.20% | 6.80% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 491 | 90.02% | 9.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 88 | 64.77% | 35.23% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518263832 | C->T | INTERGENIC | None |