Detailed information of SNP:
|
SNP ID:
sf0518275439(Gbrowse)
Chromosome: chr05 Position: 18275439 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 53.85% | 46.15% |
| All Indica | 785 | 87.90% | 12.10% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 52 | 38.46% | 61.54% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 202 | 64.36% | 35.64% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518275439 | T->C | LOC_Os05g31520(LOC_Os05g31520.1) | INTRON |