Detailed information of SNP:
|
SNP ID:
sf0518302807(Gbrowse)
Chromosome: chr05 Position: 18302807 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 89.82% | 10.18% |
| All Indica | 741 | 83.67% | 16.33% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 348 | 79.31% | 20.69% |
| Indica II | 194 | 92.78% | 7.22% |
| Indica Intermediate | 199 | 82.41% | 17.59% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518302807 | A->G | INTERGENIC | None |