Detailed information of SNP:
|
SNP ID:
sf0518331705(Gbrowse)
Chromosome: chr05 Position: 18331705 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 94.60% | 5.40% |
| All Indica | 795 | 95.72% | 4.28% |
| All Japonica | 489 | 92.23% | 7.77% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 64.04% | 35.96% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518331705 | C->A | LOC_Os05g31600(LOC_Os05g31600.1) | UTR_5_PRIME |