Detailed information of SNP:
|
SNP ID:
sf0518411363(Gbrowse)
Chromosome: chr05 Position: 18411363 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 74.49% | 25.51% |
| All Indica | 799 | 57.57% | 42.43% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 50.13% | 49.87% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518411363 | G->A | INTERGENIC | None |