Detailed information of SNP:
|
SNP ID:
sf0518411501(Gbrowse)
Chromosome: chr05 Position: 18411501 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 74.82% | 25.18% |
| All Indica | 798 | 58.15% | 41.85% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 50.93% | 49.07% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518411501 | A->G | INTERGENIC | None |