Detailed information of SNP:
|
SNP ID:
sf0518432446(Gbrowse)
Chromosome: chr05 Position: 18432446 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.23% | 45.77% |
| All Indica | 799 | 30.04% | 69.96% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 20.53% | 79.47% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518432446 | G->A | INTERGENIC | None |