Detailed information of SNP:
|
SNP ID:
sf0518534940(Gbrowse)
Chromosome: chr05 Position: 18534940 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 97.07% | 2.93% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 47 | 61.70% | 38.30% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518534940 | G->A | LOC_Os05g31930(LOC_Os05g31930.1) | Non-Synonymous SNP |