Detailed information of SNP:
|
SNP ID:
sf0518598259(Gbrowse)
Chromosome: chr05 Position: 18598259 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 58.30% | 41.70% |
| All Indica | 759 | 93.28% | 6.72% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 349 | 94.27% | 5.73% |
| Indica II | 203 | 90.15% | 9.85% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518598259 | T->C | INTERGENIC | None |