Detailed information of SNP:
|
SNP ID:
sf0518615416(Gbrowse)
Chromosome: chr05 Position: 18615416 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.67% | 42.33% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 89.54% | 10.46% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518615416 | A->G | LOC_Os05g32050(LOC_Os05g32050.1) | Synonymous |