Detailed information of SNP:
|
SNP ID:
sf0518638913(Gbrowse)
Chromosome: chr05 Position: 18638913 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 52.05% | 47.95% |
| All Indica | 797 | 82.06% | 17.94% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 23.08% | 76.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518638913 | G->A | INTERGENIC | None |