Detailed information of SNP:
|
SNP ID:
sf0518645999(Gbrowse)
Chromosome: chr05 Position: 18645999 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 60.59% | 39.41% |
| All Indica | 785 | 96.94% | 3.06% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 201 | 97.01% | 2.99% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518645999 | A->G | INTERGENIC | None |