Detailed information of SNP:
|
SNP ID:
sf0518674759(Gbrowse)
Chromosome: chr05 Position: 18674759 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.82% | 6.18% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 488 | 84.63% | 15.37% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 87 | 36.78% | 63.22% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518674759 | C->T | INTERGENIC | None |