Detailed information of SNP:
|
SNP ID:
sf0518703659(Gbrowse)
Chromosome: chr05 Position: 18703659 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 96.45% | 3.55% |
| All Indica | 764 | 94.11% | 5.89% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 99.45% | 0.55% |
| Indica II | 205 | 82.44% | 17.56% |
| Indica Intermediate | 197 | 96.45% | 3.55% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518703659 | G->T | LOC_Os05g32180(LOC_Os05g32180.1) | UTR_5_PRIME |