Detailed information of SNP:
|
SNP ID:
sf0518773907(Gbrowse)
Chromosome: chr05 Position: 18773907 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 97.87% | 2.13% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 96.33% | 3.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518773907 | G->A | INTERGENIC | None |