Detailed information of SNP:
|
SNP ID:
sf0518790224(Gbrowse)
Chromosome: chr05 Position: 18790224 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 96.93% | 3.07% |
| All Indica | 779 | 94.87% | 5.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 201 | 82.09% | 17.91% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518790224 | A->G | INTERGENIC | None |