Detailed information of SNP:
|
SNP ID:
sf0518792810(Gbrowse)
Chromosome: chr05 Position: 18792810 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 93.34% | 6.66% |
| All Indica | 693 | 89.61% | 10.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 297 | 87.88% | 12.12% |
| Indica II | 199 | 89.45% | 10.55% |
| Indica Intermediate | 197 | 92.39% | 7.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518792810 | G->A | LOC_Os05g32340(LOC_Os05g32340.1) | Non-Synonymous SNP |