Detailed information of SNP:



SNP ID: sf0518799157(Gbrowse)

Chromosome: chr05

Position: 18799157
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 62.30% 37.70%
All Indica799 98.62% 1.38%
All Japonica497 2.01% 97.99%
Aus67 95.52% 4.48%
Indica I375 99.73% 0.27%
Indica II213 96.24% 3.76%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0518799157 G->A INTERGENIC None