Detailed information of SNP:
SNP ID:
sf0518799157(Gbrowse)
Chromosome: chr05 Position: 18799157 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 62.30% | 37.70% |
All Indica | 799 | 98.62% | 1.38% |
All Japonica | 497 | 2.01% | 97.99% |
Aus | 67 | 95.52% | 4.48% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 4.26% | 95.74% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0518799157 | G->A | INTERGENIC | None |