Detailed information of SNP:
|
SNP ID:
sf0518821546(Gbrowse)
Chromosome: chr05 Position: 18821546 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 91.05% | 8.95% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 465 | 79.78% | 20.22% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 307 | 70.03% | 29.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0518821546 | T->C | LOC_Os05g32380(LOC_Os05g32380.1) | INTRON |